Friday, June 14, 2013

Science PIs Fail If They Are So Ego-Driven That They Stand in Front of Their Students

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The title of this post is adapted from a quote from one of the most important Chinese philosophers, Lao Tzu, circa 6th century BCE. I saw it on Friday and it reminded me of a tweet that Ive been meaning to write. The Lao Tzu quote is:
"A leader is not a good leader if he is so ego-driven that he is always standing in front of his team"
My tweet would have been something like this (and yes tweeter aficionados, it is less than 140 characters):
"Scientists fail what they stand for if they do not acknowledge their students at the beginning, during, and end of every talk they give."
Here's what is easy to forget. PIs get the big corner office, the love and admiration from the group, the rush from the applause of a seminar crowd. But leaders must sacrifice themselves for those that produce the work. PIs are leaders of their team. But it is not leadership for them, but for their students. 

Remember this - Scientists should choose to be lab team leaders because they want to nurture the next generation just as much as they nurture their own children.  Indeed, scientists were once students themselves who needed their own leaders.

But perhaps the need for scientists to promote their students is even more paramount today than generations before, because the scientist pool is bigger than ever (only 14% of life science phds get tenure-track jobs), the competition is stiff, and the grant money is tight.

Put your students first in every thing we do. We are here to service them. 

What are your thoughts?

Monday, June 10, 2013

Francis Collins Performs "The Sequester Blues"

Quick thought here...the NIH director Francis Collins has the coolest double helix on the neck of his guitar. Definitely a must see. But perhaps the NIH Director should, respectfully, stick to his day job and claw us out of the sequester. Or maybe collaborate with BB King to amp up his performance. Now that could get some dollars flowing back at science. Here he is singing "The Sequester Blues" to commiserate with US scientists. Click this link to see the video.



Thursday, May 30, 2013

This Is a Time of Connection & Creative Collaboration - Let Students Embrace It.

What happens when students teach project-based learning in science to each other?


Five high school seniors who call themselves WIN (Wolbachia in Nashville websitewanted to find out and their experience was stunning. This story begins with them - they all participate in the School for Science and Math at Vanderbilt, a magnet school which uses project-based laboratory learning year round with select students from the Metropolitan Nashville High School. Here's what they set out to achieve in their own words.
"As our participation in the School for Science and Math at Vanderbilt has promoted our interest in science, we hoped to share this enthusiasm with the students while also fostering their own personal development and outlook on science. We hoped that the students will feel comfortable asking questions and getting help from us because we are also high school students." Project Report Quote
The WIN team students, along with Angela Eeds (director of the SSMV) and I, partnered up this past year to use Discover the Microbes Within! The Wolbachia Project lab series as a scaffold for tethering integrative, real-world scientific research into a Metropolitan Nashville high school biology class (Overton High School freshmen and sophomores taught by Adam Taylor).  The Wolbachia Project engages high school and college students in nature and inquiry and contributes new scientific data on bacterial endosymbionts (Wolbachia, Encylopedia of Life) all across the world. The WIN team students comment..
 "As the project progressed, we continually showed them how their results were applicable to the real-world, beneficial to the addition to scientific knowledge, and impactful on the scientific community. We made efforts to stress the validity of their participation in the project by paralleling their work with the Wolbachia project which is conducted not only on a national level but on an international level." Project Report Quote
There's so much Id like to say about these students and their experiences, but most of all, as I listened to the WIN team speak after they completed their project in the spring, their comments made it joyfully clear that they did something that mattered - that gave them all a sense of meaning. First, they transcended into education role models for their peers. The WIN student scientists were seen as big shots, perhaps where star athletes, cheerleaders, and popular kids reign supreme. Second, the WIN team also pointed out that for the freshmen and sophomore students, there was an unexpected aura of comfortability among them. It sprouted specifically because of the peer-to-peer learning. It seems to me that both of these outcomes are what makes project-based learning and peer-to-peer learning work so well independently, but together they form a symbiosis that is more powerful than each one alone. 

We do not speak about it, but there is often a social gap in high school classes between the student young adults / teenagers and the teacher "big" adults. But with teacher students as young as the learners in this case, that social gap shrunk for the benefit of all. Its like science 2.0 for education. Just as social media undoubtedly connects these students as friends, social peer-to-peer learning offers an extra dose of comfortability for teaching and learning. Further empowerment  ensues with the hands-on learning of project-based science. It was an epic win / win for the WIN team.
Below is how the WIN team assessed their efforts in improving science education. Metrics from surveys taken by the 26 student learners before and after implementation of the Wolbachia Project all go up. Perhaps most significant in looking at the numbers is that these freshman and sophomore students are in Mr. Taylor's honors class and already receive extensive training in hands-on research in biology. The students put it best...
"The results from the two surveys showed our project and interactions with the students had a general positive influence on the classroom in terms of their view of and aptitude towards science. Their desire for a hands-on learning style, as shown in the surveys, suggests that the heavy rotation of labs and experiments emphasized in this project are key to generating interest in science and educating youth about STEM fields.
















Let's keep improving High School education with the help of our students. Here is a 23 minute video of the WIN students (apologies in advance for the shaky recording on my phone). 


Tuesday, May 21, 2013

A little bit of news on our lab's research system



Parasites of Parasites
Parasites of Parasites Science picture co/ Getty Images
Parasites of parasites—sometimes called hyperparasites—seem to be quite common. In fact, parasites of parasites are themselves prone to parasites, leading to what might appear to be an endless progression of interspecies abuse.
Studies in the lab and field have identified some of these elaborate, nested relationships. Last November, a team of researchers in the Netherlands published research on a wasp that lays its eggs inside a caterpillar, which in turn feeds on cabbage leaves. That means the nutrients and energy pass through three distinct organisms, and the same lab has documented related systems with even more layers of interaction.
Seth Bordenstein, a microbiologist at Vanderbilt University, studies a five-tiered system that starts with a fledgling bird. Blowflies infest the bird’s underside with bloodsucking larvae, which then drop off and fall prey to hyperparasitic wasps. The wasps, in turn, carry a parasitic bacterium called Wolbachia, which has evolved to modify its host’s reproductive system. The bacteria are subject to their own invasion, though, from tiny viruses known as bacteriophages, which hijack Wolbachia’s cellular machinery to expand their population.
Just how small can parasites get? The final layer of these systems might be the transposon, which is a roving bit of nucleic acid—a single, parasitic gene. Transposons have been discovered inside viruses that infect other viruses, which in turn infect amoebas that infect human beings. “I think it’s difficult to see where one organism begins and another one ends,” Bordenstein says. “We are only beginning to appreciate how intertwined these layers of organisms are in large flora and fauna.”
Have a burning science question you'd like to see answered in our FYI section? Email it tofyi@popsci.com or tweet @popsci hashtag #PopSciFYI.

Sunday, May 19, 2013

ASM 2013 LINKS

A brief post that the American Society for Microbiology Meeting | Final Program PDF is happening now in Denver. The latest science in microbiology can be tracked on
There was a blow out session on "Citizen Science" tonight (chaired by David Coil and Jonathan Eisen, blog post here), which inspired many. The key tweets from that session can be seen through this excellent storify by @Sponch2. I highly recommend a scan of these tweets for anyone interested in microbiology, discovery-based science, and project-based research in and outside the classroom. Rumor has it that even da Wolbachia Project (pdf of article in American Biology Teacher) got a shout out.

Trailer video for Wolbachia Project in Nashville

Monday, May 13, 2013

Those who can, DO. Those who understand, TEACH.


"You must have the zeal of a missionary....You need to find satisfaction in your actions and you need to find satisfaction in your results. That will make you a great teacher" - George Wolfe

Here is a brief post on my good friend and Emmy Award Winner George Wolfe and his TEDx talk. George is director of the magnet high school - the Loudon Academy of Science, which was established in partnership with the Howard Hughes Medical Institute in 2005. His bio is ridiculously extensive, including hosting a PBS show called Homework Hotline, and I encourage you to read his list of accomplishments by clicking the link associated with his name.

In the TEDx talk, he reminds us that we are all teachers at some point in our lives, if not our profession. You teach your children, peers, and colleagues, and thus he states that there is no more important job than teaching. "Where would we be without teaching?", he asks.

George is one of the main brains behind Discover the Microbes Within! The Wolbachia Project that we formalized at an international national level about eight years ago. He is also a pure inspiration in the truest sense. His TEDx-talk is called the Power of One. I thank George for this talk and wish that we had more access to his passion on a daily basis. I have learned a tremendous amount from him.


Monday, April 29, 2013

The History of Science: When Was The Word "Scientist" First Used?


As a scientist, I found Prof. Laura Snyder's TED talk fascinating. I suspect her narrative on the history of science will have wide appeal, which is why Im sharing it here as a blog post rather than tweet. 

Prof. Laura Synder is a Fulbright Scholar and Professor of Philosophy at St. John's University. In her talk, she illuminates to me and I suspect to you as well that the word "scientist" was shockingly first used in 1833, not that long ago! We owe its origins to a poet's inquisitiveness. Ultimately, it was the scientist William Whewell who coined the term scientist in response to the poet's plea that "natural philosophers" upgrade the name of their profession. How could it be that the word scientist was invented so recently?

She gives flesh to four Cambridge University students who in 1812 formed the "Philosophical Breakfast Club" to talk about the state of science in Britain and the world. In ushering in a new scientific revolution that even reached to Charles Darwin, the Philosophical Breakfast Club rapturously changed science. She also reminds us loud and clear that "science is not just for scientists". These six words spoken at the end of her talk resonate boldly with me. They are an anthem for science communication and outreach and for social media platforms like Twitter and Blogging that build bridges between scientists and those interested in science.


And for those that prefer reading over watching, here is Laura Snyder's TED talk transposed to text. Ive highlighted in blue some key sections that stand out to me. 

"I'd like you to come back with me for a moment to the 19th century, specifically to June 24, 1833. The British Association for the Advancement of Science is holding its third meeting at the University of Cambridge. It's the first night of the meeting, and a confrontation is about to take place that will change science forever.

An elderly, white-haired man stands up. The members of the Association are shocked to realize that it's the poet Samuel Taylor Coleridge, who hadn't even left his house in years until that day. They're even more shocked by what he says.

"You must stop calling yourselves natural philosophers."

Coleridge felt that true philosophers like himself pondered the cosmos from their armchairs. They were not mucking around in the fossil pits or conducting messy experiments with electrical piles like the members of the British Association.

The crowd grew angry and began to complain loudly. A young Cambridge scholar named William Whewell stood up and quieted the audience. He politely agreed that an appropriate name for the members of the association did not exist.

"If 'philosophers' is taken to be too wide and lofty a term," he said, "then, by analogy with 'artist,' we may form 'scientist.'" This was the first time the word scientist was uttered in public, only 179 years ago.

I first found out about this confrontation when I was in graduate school, and it kind of blew me away. I mean, how could the word scientist not have existed until 1833? What were scientists called before? What had changed to make a new name necessary precisely at that moment? Prior to this meeting, those who studied the natural world were talented amateurs. Think of the country clergyman or squire collecting his beetles or fossils, like Charles Darwin, for example, or, the hired help of a nobleman, like Joseph Priestley, who was the literary companion to the Marquis of Lansdowne when he discovered oxygen. After this, they were scientists, professionals with a particular scientific method, goals, societies and funding.

Much of this revolution can be traced to four men who met at Cambridge University in 1812: Charles Babbage, John Herschel, Richard Jones and William Whewell. These were brilliant, driven men who accomplished amazing things. Charles Babbage, I think known to most TEDsters, invented the first mechanical calculator and the first prototype of a modern computer. John Herschel mapped the stars of the southern hemisphere, and, in his spare time, co-invented photography. I'm sure we could all be that productive without Facebook or Twitter to take up our time. Richard Jones became an important economist who later influenced Karl Marx. And Whewell not only coined the term scientist, as well as the words anode, cathode and ion, but spearheaded international big science with his global research on the tides. In the Cambridge winter of 1812 and 1813, the four met for what they called philosophical breakfasts. They talked about science and the need for a new scientific revolution. They felt science had stagnated since the days of the scientific revolution that had happened in the 17th century. It was time for a new revolution, which they pledged to bring about, and what's so amazing about these guys is, not only did they have these grandiose undergraduate dreams, but they actually carried them out, even beyond their wildest dreams. And I'm going to tell you today about four major changes to science these men made.

About 200 years before, Francis Bacon and then, later, Isaac Newton, had proposed an inductive scientific method. Now that's a method that starts from observations and experiments and moves to generalizations about nature called natural laws, which are always subject to revision or rejection should new evidence arise. However, in 1809, David Ricardo muddied the waters by arguing that the science of economics should use a different, deductive method. The problem was that an influential group at Oxford began arguing that because it worked so well in economics, this deductive method ought to be applied to the natural sciences too. The members of the philosophical breakfast club disagreed. They wrote books and articles promoting inductive method in all the sciences that were widely read by natural philosophers, university students and members of the public. Reading one of Herschel's books was such a watershed moment for Charles Darwin that he would later say, "Scarcely anything in my life made so deep an impression on me. It made me wish to add my might to the accumulated store of natural knowledge." It also shaped Darwin's scientific method, as well as that used by his peers. [Science for the public good]

Previously, it was believed that scientific knowledge ought to be used for the good of the king or queen, or for one's own personal gain. For example, ship captains needed to know information about the tides in order to safely dock at ports. Harbormasters would gather this knowledge and sell it to the ship captains. The philosophical breakfast club changed that, working together. Whewell's worldwide study of the tides resulted in public tide tables and tidal maps that freely provided the harbormasters' knowledge to all ship captains. Herschel helped by making tidal observations off the coast of South Africa, and, as he complained to Whewell, he was knocked off the docks during a violent high tide for his trouble. The four men really helped each other in every way. They also relentlessly lobbied the British government for the money to build Babbage's engines because they believed these engines would have a huge practical impact on society. In the days before pocket calculators, the numbers that most professionals needed -- bankers, insurance agents, ship captains, engineers — were to be found in lookup books like this, filled with tables of figures. These tables were calculated using a fixed procedure over and over by part-time workers known as -- and this is amazing -- computers, but these calculations were really difficult. I mean, this nautical almanac published the lunar differences for every month of the year. Each month required 1,365 calculations, so these tables were filled with mistakes. Babbage's difference engine was the first mechanical calculator devised to accurately compute any of these tables. Two models of his engine were built in the last 20 years by a team from the Science Museum of London using his own plans. This is the one now at the Computer History Museum in California, and it calculates accurately. It actually works. Later, Babbage's analytical engine was the first mechanical computer in the modern sense. It had a separate memory and central processor. It was capable of iteration, conditional branching and parallel processing, and it was programmable using punched cards, an idea Babbage took from Jacquard's loom. Tragically, Babbage's engines never were built in his day because most people thought that non-human computers would have no usefulness for the public. [New scientific institutions]

Founded in Bacon's time, the Royal Society of London was the foremost scientific society in England and even in the rest of the world. By the 19th century, it had become a kind of gentleman's club populated mainly by antiquarians, literary men and the nobility. The members of the philosophical breakfast club helped form a number of new scientific societies, including the British Association. These new societies required that members be active researchers publishing their results. They reinstated the tradition of the Q&A after scientific papers were read, which had been discontinued by the Royal Society as being ungentlemanly. And for the first time, they gave women a foot in the door of science. Members were encouraged to bring their wives, daughters and sisters to the meetings of the British Association, and while the women were expected to attend only the public lectures and the social events like this one, they began to infiltrate the scientific sessions as well. The British Association would later be the first of the major national science organizations in the world to admit women as full members. [External funding for science]

Up to the 19th century, natural philosophers were expected to pay for their own equipment and supplies. Occasionally, there were prizes, such as that given to John Harrison in the 18th century, for solving the so-called longitude problem, but prizes were only given after the fact, when they were given at all. On the advice of the philosophical breakfast club, the British Association began to use the extra money generated by its meetings to give grants for research in astronomy, the tides, fossil fish, shipbuilding, and many other areas. These grants not only allowed less wealthy men to conduct research, but they also encouraged thinking outside the box, rather than just trying to solve one pre-set question. Eventually, the Royal Society and the scientific societies of other countries followed suit, and this has become -- fortunately it's become -- a major part of the scientific landscape today.

So the philosophical breakfast club helped invent the modern scientist. That's the heroic part of their story. There's a flip side as well. They did not foresee at least one consequence of their revolution. They would have been deeply dismayed by today's disjunction between science and the rest of culture. It's shocking to realize that only 28 percent of American adults have even a very basic level of science literacy, and this was tested by asking simple questions like, "Did humans and dinosaurs inhabit the Earth at the same time?" and "What proportion of the Earth is covered in water?" Once scientists became members of a professional group, they were slowly walled off from the rest of us. This is the unintended consequence of the revolution that started with our four friends.

Charles Darwin said, "I sometimes think that general and popular treatises are almost as important for the progress of science as original work." In fact, "Origin of Species" was written for a general and popular audience, and was widely read when it first appeared. Darwin knew what we seem to have forgotten, that science is not only for scientists."

Thank you.

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